![]() G++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/home/me/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I./inst/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fastLm.cpp -o fastLm.o G++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/home/me/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I./inst/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o G++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/home/me/R/x86_64-pc-linux-gnu-library/3.5/Rcpp/include" -I./inst/include -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppArmadillo.cpp -o RcppArmadillo.o found and suitableĬonfig.status: creating inst/include/RcppArmadilloConfigGenerated.h yes, with OpenMP as version 5.4.0Ĭhecking for macOS. (cached) yesĬhecking whether g++ version is sufficient. ![]() (cached) yesĬhecking whether g++ accepts -g. g++ -EĬhecking whether we are using the GNU C++ compiler. yesĬhecking how to run the C++ preprocessor. noĬhecking whether we are using the GNU C++ compiler. a.outĬhecking whether we are cross compiling. yesĬhecking for C++ compiler default output file name. ** package ‘RcppArmadillo’ correctement décompressé et sommes MD5 vérifiéesĬhecking whether the C++ compiler works. * installing *source* package ‘RcppArmadillo’. > BiocManager::install("DESeq2", version = "3.8")īioconductor version 3.8 (BiocManager 1.30.4), R 3.5.2 ()Īlso installing the dependency ‘RcppArmadillo’Ĭontent type 'application/x-gzip' length 1333647 bytes (1.3 MB)Ĭontent type 'application/x-gzip' length 2062838 bytes (2.0 MB) Here are the DESEq2 installation errors: > if (!requireNamespace("BiocManager", quietly = TRUE)) I have read many posts and tried the different tips across, but none have worked so far. I am facing problems to install the DESeq2 package on my linux laptop.
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